Updated 2019-02-04

scythe.pbs

#PBS -N scytheJob
#PBS -l nodes=2:ppn=4
#PBS -l walltime=2:00
#PBS -q iw-shared-6
#PBS -j oe
#PBS -o scytheResult.out

cd $PBS_O_WORKDIR
module load scythe
scythe -a adapter_file.fasta -o trimmed_sequences.fasta sequences.fastq