Updated 2021-02-10

Mash pbs

#PBS -N mashTest
#PBS -A [Account]
#PBS -l nodes=2:ppn=4
#PBS -l pmem=2gb
#PBS -l walltime=2:00
#PBS -q inferno
#PBS -j oe
#PBS -o mashTest.out

cd $PBS_O_WORKDIR
module load gcc/4.9.0
module load capnproto-c++/0.5.3
module load boost/1.57.0
module load zlib/1.2.8
module load autoconf/2.69
module load mash

mash sketch genome1.fna
mash sketch genome2.fna
mash dist genome1.fna.msh genome2.fna.msh