Updated 2019-02-04

bwa.pbs

#PBS -N bwaTest
#PBS -l nodes=2:ppn=4
#PBS -l walltime=30:00
#PBS -q iw-shared-6
#PBS -j oe
#PBS -o bwaResult.out

cd $PBS_O_WORKDIR
module load open64/4.5.1
module load bwa/0.7.4
bwa aln -t 8 RefSeqbwaidx <sequence file>.txt > <output file>.txt.bwa