Updated 2021-02-10

Bowtie2 pbs

#PBS -N bowtie2Test
#PBS -A [Account]
#PBS -l nodes=2:ppn=8
#PBS -l walltime=2:00
#PBS -q inferno
#PBS -j oe
#PBS -o bt2Result.out

cd $PBS_O_WORKDIR
module load bowtie2/2.3.2
bowtie2 -x <.genomes file> -U <.fq file> -S <allignment .sam file>