Updated 2021-02-10

Bedtools pbs

#PBS -N bedtoolsTest
#PBS -A [Account]
#PBS -l nodes=2:ppn=4
#PBS -l walltime=20:00
#PBS -q inferno
#PBS -j oe
#PBS -o bedtoolsResult.out

cd $PBS_O_WORKDIR
module load gcc/4.9.0
module load bedtools/2.25
bedtools intersect -a reads.bed -b genes.bed