Updated 2020-04-07

Software Questions

What software do we have campus licenses for?

  • Georgia Tech maintains site license for many software packages, many of which are already installed on PACE managed clusters. Other HPC related software can be installed on a per-request basis.
  • All software and systems must be used in compliance with the Georgia Tech Cyber Security Policies.
  • The source of GT licensed software can be found at this link.

How can I make my code more efficient?

  • Here are some common things to start with:
    • Compile your code with optimizations: Using -O3 compiler optimization would provide significant speedup.
    • Use numerical libraries: PACE clusters offer a number of numerical libraries for better performance and consistency. These libraries include fast and community-tested implementations for a large variety of computations, such as dense/sparse linear algebra, fourier transform, data processing, multimedia, and so on.
    • Use the scratch storage: If your code stores or manipulates large files, you may see benefit by utilizing the high-performance scratch storage.
    • Use GPUs: PACE clusters include nodes with GPUs. Please use them if you believe your job would benefit from it.

What software is available on the Pace clusters?

Note

You can see a full list of software available for the node you are currently on by running the module avail command.

RHEL6 Software
  • The following are available on nodes that run Red Hat Enterprise Linux 6 (RHEL6):
    • 454dataanalysis/2.9
    • abaqus/2017
    • abaqus/2018
    • abaqus/6.10-1
    • abaqus/6.10-2
    • abaqus/6.11
    • abaqus/6.12
    • abaqus/6.13
    • abaqus/6.14
    • abaqus/6.16
    • abaqus/6.6
    • abaqus/6.7
    • abaqus/6.9
    • abinit/6.12.3
    • abinit/7.10.2
    • abinit/7.10.4
    • abinit/8.4.2
    • abyss/1.5.2
    • acme/rhel6.5
    • acml/4.4.0
    • acml/4.4.0-int64
    • acml/5.0.0
    • acml/5.0.0-fma4
    • acml/5.0.0-int64
    • acml/5.0.0-int64-fma4
    • acml/5.1.0
    • acml/5.1.0-fma4
    • acml/5.1.0-int64
    • acml/5.1.0-int64-fma4
    • acml/5.2.0
    • acml/5.2.0-fma4
    • acml/5.2.0-int64
    • acml/5.2.0-int64-fma4
    • acml/5.2.0-int64-fma4-rev
    • adf/2012.01(default)
    • adf/201408
    • advisor/2013xe
    • allpathslg/46233
    • alps/2.1.1
    • alps/2.2b3
    • amber/16
    • amos/3.1.0
    • amphora2/20140409
    • ampl/20110121
    • anaconda2/2.1.0(default)
    • anaconda2/2019.03
    • anaconda2/4.2.0
    • anaconda2/latest
    • anaconda3/2.1.0
    • anaconda3/2019.03
    • anaconda3/4.1.1
    • anaconda3/4.2.0
    • anaconda3/analytics
    • anaconda3/latest
    • ansys/13.0
    • ansys/14.0
    • ansys/14.5
    • ansys/14.5.7
    • ansys/15.0
    • ansys/15.0.7
    • ansys/16.2
    • ansys/17.0
    • ansys/18.0
    • ansys/18.2
    • ansys/19.1
    • apache-ant/1.9.5
    • argtable/2.13
    • armadillo/1.0.4
    • armadillo/2.4.6
    • armadillo/3.6.2
    • arpack/96
    • ase/3.6.0
    • ase/3.9.1
    • atat/3.00
    • atk/2.13.90
    • atlas/3.10.2
    • atlas/3.8.4
    • augustus/3.0.2
    • autoconf/2.6.9
    • autoconf/2.65
    • autoconf/2.69
    • automake/1.14.1
    • automake/1.15
    • basemount/0.15.96.2155
    • bazel/0.3.1
    • bazel/0.4.2
    • bbcp/100726
    • bbcp/130503(default)
    • bcl2fastq/2.20.0.422
    • beast/1.8.2
    • bedtools/2.21.0
    • bedtools/2.25
    • bfast/0.7.0a
    • bioperl/1.2.3
    • bismark/0.10.1
    • blat/35
    • blat/rhel6
    • blender/2.68
    • boost/1.46.1
    • boost/1.49.0
    • boost/1.50.0
    • boost/1.51.0
    • boost/1.51.0-caffe
    • boost/1.52.0
    • boost/1.53.0
    • boost/1.57.0
    • boost/1.58.0
    • boost/1.59.0
    • boost/1.61.0
    • bowtie/0.12.7
    • bowtie2/2.0.0-beta7
    • bowtie2/2.1.0
    • bowtie2/2.3.2
    • bsmap/2.74
    • bwa/0.6.2
    • bwa/0.7.0a
    • bwa/0.7.4
    • bzip2/1.0.6
    • cadmesh/1.0
    • cadmesh/1.0-67
    • caffe/1.0
    • caffe/1.0-cuda8
    • cairo/1.12.16
    • cantera/2.0.2
    • cantera/2.1.0
    • cantera/2.2.1
    • canu/1.6
    • capnproto-c++/0.5.3
    • carma3/20120118
    • cart3d/1.4.9
    • ccp4/7.0
    • cdf/36.0.4
    • cdhit/4.6.1
    • cdo/1.9.5
    • cfitsio/3.370
    • cgal/4.3
    • chasm/1.0.6
    • cisTEM/1.0.0
    • clisp/2.49
    • cln/1.3.4
    • clp/1.16.9
    • clustal-omega/1.2.1
    • clustalw/1.83
    • clustalw/2.1
    • cmake/2.8.10
    • cmake/2.8.12
    • cmake/2.8.5
    • cmake/2.8.7
    • cmake/3.1.3
    • cmake/3.2.0
    • cmake/3.5.2
    • cmake/3.9.1
    • cobra/2.0.5
    • codexl/1.3.3487
    • coinhsl/2012.12.21
    • comsol/4.1-research
    • comsol/4.2a-research
    • comsol/4.2-research(default)
    • comsol/4.3a
    • comsol/4.3a-research
    • comsol/4.3b-research
    • comsol/4.3-research
    • comsol/4.4-research
    • comsol/5.1-research
    • comsol/5.2a-research
    • comsol/5.2-research
    • comsol/5.3a-research
    • comsol/5.3-research
    • converge/2.1.0
    • converge/2.2.0
    • converge/2.2.0-syang305
    • cp2k/5.1
    • cplex/12.6.1.0
    • cpmd/3.15.1
    • cpmd/4.1
    • crass/0.3.6
    • cuda/3.1
    • cuda/4.0.17
    • cuda/4.1.28
    • cuda/4.2.9
    • cuda/5.0.35
    • cuda/5.0.35_noopengl
    • cuda/6.0.37
    • cuda/7.0.28
    • cuda/7.5.18
    • cuda/8.0.44
    • cuda/9.0
    • cuda/9.1
    • cudnn/5.0
    • cudnn/6.0
    • cudnn/7.0.5
    • cudnn/7.5
    • cufflinks/2.0.1
    • cufflinks/2.1.1
    • cufflinks/2.2.0
    • curl/7.42.1
    • cutadapt/1.1
    • cutadapt/1.3
    • cutadapt/1.8.1
    • daal/2016
    • dakota/5.3
    • dakota/5.3.1
    • dakota/6.2.0
    • dakota/6.7.0
    • DAMASK/3813
    • ddscat/7.3
    • ddt/3.1
    • ddt/3.2
    • ddt/4.1.1
    • deeparg-ss/20190523
    • discovardenovo/52488
    • distmap/1.0
    • dot
    • doxygen/2014-11-21
    • eigen/3.0.5
    • eigen/3.2.1
    • eigen/3.2.4
    • ekopath/4.0.11
    • elemental/0.79p1
    • elemental/0.85
    • emboss/6.5.7
    • emboss/6.6.0
    • empty
    • ensembl/69
    • erlang/R15B
    • espresso/5.1.1
    • espresso/6.2.1
    • express/1.4.1
    • fast/1.8.mc
    • fasta/36.3.5a
    • fastqc/0.10.1
    • fastqc/0.11.2
    • fasttree/2.1.7
    • fastx_toolkit/0.0.13.2
    • fastx_toolkit/0.0.14
    • fdtd/7.5.7
    • fdtd/8.0.4
    • fdtd/8.12.527
    • ffmpeg/1.1
    • ffmpeg/3.2.4
    • fftw/2.1.5
    • fftw/3.3
    • fftw/3.3.4(default)
    • fio/2.2.12
    • flann/1.7.1
    • flint/2.4.4
    • fltk/1.3.2
    • fltk/1.3.3
    • forge/18.2.1(default)
    • forge/4.2.2
    • forge/6.0.5
    • forge/7.0
    • fping/3.10
    • frappe/1.1
    • freefem++/3.46
    • fsl/5.0.6
    • fst/9.32.5
    • fuse/2.9.4
    • gamess/20110419
    • gams/23.6.5
    • gams/23.8.1
    • gamslinks/0.4
    • gamslinks/r1291
    • gatk/1.4-9
    • gatk/1.6-13
    • gatk/2.6
    • gatk/2.7
    • gaussian/G03E01
    • gaussian/G09A02
    • gaussian/G09B01LINDA
    • gaussian/G09D01LINDA
    • gaussian/G16
    • gaussian-emory/G09AMD64
    • gcc/4.4.5
    • gcc/4.4.6
    • gcc/4.6.2
    • gcc/4.7.0
    • gcc/4.7.2
    • gcc/4.9.0(default)
    • gcc/4.9.4-tensorflow
    • gcc/5.3.0
    • gcc/7.3.0
    • gdal/1.10.1
    • gdb/7.12
    • gdb/7.6
    • geant/4.10.0
    • geant/4.10.02-p01
    • geant/4.10.02-p01-th
    • geant/4.10.02-p01-th-vbo
    • geant/4.10.02-p01-th-vbo-67
    • geant/4.10.04-p02
    • geant/4.9.6.p02
    • genemark/2.5p
    • genemark/2.5p_script
    • genesis/2.3
    • gerris/110708
    • gerris/131206
    • gerris/131206a
    • gettext/0.19.8.1
    • gflags/2.2.0
    • ginac/1.6.5
    • git/1.7.6
    • git/1.8.3.3
    • git/2.11.0
    • git/2.13.4
    • glib/2.40.0
    • globus-toolkit/6.0
    • glog/0.3.3
    • glpk/4.56
    • gmap/20131127
    • gmp/5.0.2
    • gmp/6.0.0a
    • gmp/6.1.0
    • gmt/5.1.0
    • gmt/5.3.3
    • gnuparallel/20150422
    • gnuparallel/20180822
    • gnuplot/4.6.5
    • gnuplot/4.6.6
    • gnuplot/5.0.5
    • go/1.5.3
    • GotoBLAS2/1.13
    • gpaw/0.11
    • gperftools/2.1
    • gPROMS/3.4.0.52954
    • gpstk/2.3
    • grace/5.1.23
    • grads/2.0.1
    • grads/2.0.a9
    • graph-tool/2.2.29.1
    • gromacs/4.6
    • gromacs/5.0.4
    • gromacs/5.0.6
    • gromacs/5.0.6-AMD
    • gsl/1.16
    • gtfold/3.0
    • gtkglextmm/1.2.0
    • gts/110121
    • gts/121130
    • gulp/4.3
    • gurobi/5.1.0
    • gurobi/6.5.0
    • gurobi/7.0.1
    • gurobi/7.5.1
    • gurobi/8.1.0
    • h4h5tools/2.2.2
    • h5utils/1.12.1
    • hadoop/1.1.2
    • hadoop/1.1.2_local
    • hadoop/1.1.2_new
    • hadoop/2.6.0
    • hadoop/2.6.3
    • hadoop/2.7.2(default)
    • hadoop-bam/5.1
    • hadoop-rdma/0.9.8_local
    • harminv/1.3.1
    • haskell/2013.2.0.0(default)
    • haskell/7.10.2
    • hbase/1.1.2
    • hdf4/4.2.11
    • hdf4/4.2.7
    • hdf5/1.8.14
    • hdf5/1.8.14.nompi
    • hdf5/1.8.19
    • heeds/MDO-2015.11
    • hfss/15.0(default)
    • hfss/17.0
    • hg/2.1
    • hmmer/3.0
    • hmmer/3.1b1
    • hpc-clust/1.2.0
    • hpnssh/14v2
    • htk/3.4.1
    • htslib/0.0
    • hwloc/1.10.0(default)
    • hyphy/2.2.3
    • hypre/2.10.0b
    • idba/1.1.1
    • idba/1.1.1_kMSS
    • imagemagick/6.8.3
    • impi/2018.1.163
    • impi/4.0.3.008
    • impi/4.1.0.024
    • impi/5.0.1.035
    • impi/5.1.1.109
    • infernal/1.0.2
    • inotifytools/3.14
    • inspector/2013xe
    • intel/10.1.018
    • intel/11.1.059
    • intel/12.0.0.084
    • intel/12.1.4
    • intel/13.2.146
    • intel/14.0.2
    • intel/15.0(default)
    • intel/16.0
    • intel/17.0
    • intel/18.0
    • ior/2.10.3
    • ior/3.0.0
    • iozone/3.430
    • iperf/2.0.5
    • iperf/3.0
    • ipopt/3.11.5
    • ipp/5.3.0.80
    • ipp/7.0
    • ipp/7.1.1
    • iprscan/4.8
    • irods/3.3
    • isight/5.9
    • issm/4.15
    • itac/8.0.3.007
    • jacket/1.8.2
    • java/1.7.0
    • java/1.8.0_152
    • java/1.8.0_25
    • jellyfish/1.1.6(default)
    • jemalloc/3.4.0
    • jemalloc/5.1.0
    • jruby/9.0.0.0.rc1
    • julia/0.4.6
    • julia/0.4.6-general
    • julia/0.6.0-dev
    • julia/0.6.2
    • julia/1.0.0
    • kaldi/1.0
    • kanalyze/0.9.5
    • kraken/0.10.4-beta
    • lagan/2.0
    • lammps/13Mar18
    • lammps/15May15
    • lammps/22Aug18
    • lammps/30Jul16
    • lammps/30Jul16-heap
    • lammps/9Dec14
    • lapack/3.5.0
    • lapack/3.6.0
    • leveldb/1.15.0
    • leveldb/1.20.0
    • libbeef/0.1.1
    • libcfu/0.03
    • libcrispr/1.0.0
    • libctl/3.2.2
    • libevent/2.1.8(default)
    • libflame/01082015
    • libgd/2.1.1
    • libgtextutils/0.6.1
    • libgtextutils/0.7
    • libjpeg/9a
    • liblbfgs/1.10
    • liblzma/20181111
    • libpciaccess/0.14
    • libpng/1.6.16
    • libsbml/5.8.0
    • libsodium/0.4.5
    • libtiff/4.0.3
    • libtool/2.4.3
    • libunwind/0.99
    • libvpx/1.3.0
    • libxc/2.0.1
    • libxc/2.0.2
    • libxc/2.1.2
    • libxc/2.2.1
    • libxc/2.2.2
    • libxc/4.0.4
    • libxml2/2.9.2
    • liggghts/2.1
    • liggghts/3.1.0
    • liggghts/3.8.0
    • likwid/3.0
    • llvm/3.3
    • lmdb/0.0.0
    • lrzip/0.621
    • ls-dyna/r7.0.0-mpi
    • ls-dyna/r7.0.0-smp
    • ls-dyna/r7.1.1-hybrid
    • ls-dyna/r7.1.1-mpi
    • lucy/1.20
    • mach/1.0pre
    • mafft/7.058
    • mafft/7.245
    • magma/1.2.1
    • maple/14
    • maple/15
    • maple/16
    • maple/2018
    • maq/0.6.6
    • mash/1.0.2
    • materialsstudio/61
    • mathematica/10.0
    • mathematica/11.0
    • mathematica/5.2
    • mathematica/7.0
    • mathematica/8.0(default)
    • mathematica/9.0
    • matio/1.5.2
    • matlab/r2007a
    • matlab/r2009b
    • matlab/r2010a
    • matlab/r2010a-dcs
    • matlab/r2010b
    • matlab/r2011a
    • matlab/r2011a-dcs
    • matlab/r2011b(default)
    • matlab/r2012a
    • matlab/r2012b
    • matlab/r2013a
    • matlab/r2013b
    • matlab/r2014a
    • matlab/r2014b
    • matlab/r2015a
    • matlab/r2015b
    • matlab/r2016a
    • matlab/r2016b
    • matlab/r2017a
    • matlab/r2018b
    • mauve/2.3.1
    • maven/3.1.1
    • maven/3.2.5
    • maxima/5.28.0
    • maxwell/16.0
    • mcl/14-137
    • meep/1.2.1
    • meep-intel/1.2.1
    • meep-noarch/1.2.1
    • meme/4.9.0
    • meme/4.9.1
    • mercurial/2.1
    • mesa/7.9.2
    • metamos/1.1
    • metamos/1.3
    • metasim/0.9.5
    • metavelvet/1.2.02
    • metis/5.1.0
    • mira/4.0
    • mira/4.0rc1
    • mkl/10.0
    • mkl/10.2
    • mkl/10.3
    • mkl/11.0
    • mkl/11.0.1
    • mkl/11.2(default)
    • mkl/11.3
    • mkl/2017u4
    • mlpack/1.0.4
    • module-cvs
    • module-info
    • modules
    • moe/2007.09
    • moe/2009.10
    • moe/2012.10
    • mono/2.10.8
    • moose/20180406
    • mosaik/2.2.3
    • mothur/1.30.1
    • mpb/1.5
    • mpb-hdf_1.8.9-test/1.4.2_hdf_test
    • mpb-hdftest/1.4.2
    • mpfr/3.1.2
    • mpibzip2/0.6
    • mpir/2.6.0
    • mpj/0.38
    • mprime/27.9
    • mummer/3.23
    • mumps/4.10.0
    • mumps/5.0.0
    • muparser/2.2.5
    • muscle/3.8.31
    • mvapich2/1.9
    • mvapich2/2.0
    • mvapich2/2.1(default)
    • mvapich2/2.1_test
    • mvapich2/2.2
    • mvapich2/2.3
    • nag/5.2
    • nag/6.0
    • namd/2.10
    • namd/2.11_ibverbs
    • namd/2.11_ibverbs_smp
    • namd/2.12_ibverbs
    • namd/20150301
    • namd/20150301_abudhabi
    • namd/20150301-fma3
    • namd/20150301-fma4
    • namd/20160810
    • namd/20160810_abudhabi
    • namd/20160810-devel
    • namd-devel/20160810
    • nastran/2014
    • ncbi_blast/2.2.25
    • ncbi_blast/2.2.27
    • ncbi_blast/2.2.28
    • ncbi_blast/2.2.28_binary
    • ncbi_blast/2.2.29
    • ncbi_blast/2.22.2
    • ncftp/3.2.5
    • ncl/2.1.18
    • ncl/6.0.0
    • ncl/6.1.0-beta
    • ncl/6.3.0
    • nco/4.1.0
    • nco/4.4.4
    • nco/4.6.0
    • ncview/2.1.2(default)
    • ncview/2.1.7
    • nedit/5.5
    • neper/3.3.0
    • netcdf/4.3.3
    • netperf/2.6.0
    • newrepo
    • ngsqc_toolkit/2.3.3
    • nlopt/2.5.0
    • null
    • nwchem/6.5
    • nwchem/6.60
    • nwchem/6.60-mkl
    • nwchem/6.8
    • nx/10.0
    • oases/0.2.08
    • obsgrid/04022010
    • ocaml/4.00.1
    • ocaml/4.01.0
    • octave/4.2.0
    • octopus/4.1.2
    • octopus/5.0.1
    • ODBC/2.3.0
    • ODBC/2.3.1
    • oldrepo
    • open64/4.2.5
    • open64/4.5.1
    • open64/4.5.2
    • openbabel/2.3.2
    • openblas/0.2.13
    • opencl/appsdk/2.7
    • opencl/appsdk/2.9
    • opencl/clamdblas/1.8.269
    • opencl/clamdfft/1.8.269
    • opencl/clmagma/0.3.0
    • opencv/2.3.1
    • opencv/2.4.11
    • opencv/2.4.2
    • opendx/4.4.4
    • openfoam/1712
    • openfoam/2.3.0
    • openfoam/3.0.0
    • openfoam/5.0
    • openfoam/6.0
    • openmpi/1.6
    • openmpi/1.7
    • openmpi/1.8(default)
    • openmpi/2.1.1
    • openmpi-debug/1.5.4
    • openmx/3.7
    • opensees/3.0.3
    • opensees/5621
    • openss/2.2
    • openss/2.3.1-mvapich2
    • openss/2.3.1-openmpi
    • openss/2.3.1-rc5
    • openvsp/2.3.0
    • optflux/3.0.7
    • oracle_client/11.2
    • osu-micro-benchmarks/4.4.1
    • p4vasp/0.3.29
    • paml/4.7
    • panasas/5.2.1.pan
    • pandaseq/2.9(default)
    • papi/5.4.0
    • parallel_meta/2.4
    • parallel_meta/2.4.1
    • paraview/4.3.1
    • paraview/5.1.0
    • pari/2.5.0
    • parmetis/3.2.0
    • parmetis/4.0.3
    • parsec/1.3.6
    • parsec-devel/1.3.6
    • pbzip2/1.1.6
    • pcl/1.7.2
    • pcre/8.39
    • pdsh/2.27
    • pdt/3.20
    • pear/0.9.0
    • peridigm/2012
    • perl/5.10.1
    • perl/5.14.2(default)
    • perl/5.14.4
    • perl/5.22.1
    • perm/0.4.0
    • petsc/3.5.3/debug
    • petsc/3.5.3/opt
    • petsc/3.5.4/debug
    • petsc/3.5.4/opt
    • petsc/3.5.4-complex/debug
    • petsc/3.5.4-complex/opt
    • petsc/3.5.4-nomkl/opt
    • petsc/3.7.6/opt
    • petsc/3.8.3/opt
    • pgenesis/2.3
    • pgi/10.2
    • pgi/11.10
    • pgi/11.5
    • pgi/11.6
    • pgi/11.7
    • pgi/11.8
    • pgi/12.10
    • pgi/12.3
    • pgi/14.10(default)
    • pgi/18.10
    • pgplot/5.2
    • phenix/1.11.1
    • phono3py/1.10.9
    • php/5.6.30
    • phylip/3.696
    • PhylOTU/0413
    • phyml/20110919
    • phyml/20120412
    • picardtools/1.101
    • picardtools/1.93
    • pig/0.11.1
    • plink/1.07
    • plplot/5.9.9
    • pnetcdf/1.6.1
    • poco/1.7.3
    • povray/3.7
    • pplacer/1.1alpha15
    • predict/2.2.3
    • prodigal/2.6.1
    • profess/3.0
    • protobuf/2.5.0
    • protobuf/3.0.0
    • pygtk/2.24.0
    • pymatgen/2.7.9
    • python/2.7(default)
    • python/3.4
    • python/3.6
    • python-internal/2.7.10
    • qiime/1.7.0
    • qiime/1.8.0
    • qiime/1.9.0
    • qiime/1.9.1
    • qperm/0.0
    • qt/4.6.4
    • qt/4.8.1
    • qt/4.8.2
    • qt/4.8.3
    • qt/5.5.1
    • R/2.13.1
    • R/2.14.2-Revo
    • R/2.15.0
    • R/2.15.2
    • R/2.15.2_shared_lib
    • R/3.0.1
    • R/3.1.0
    • R/3.1.2
    • R/3.2.2
    • R/3.2.4
    • R/3.3.2
    • R/3.4.3
    • R/3.5.3
    • R/3.6.0
    • rapsearch/2.16
    • raxml/8.0.19
    • ray/2.3.1
    • ray-devel/2.3.1
    • remora/1.8.2
    • repeatmasker/3.3.0-p1
    • rhel7.module
    • rmblast/1.2
    • rmblast/2.2.27
    • rna-star/2.3.0e
    • RNAStructProfiling/0513
    • RNAStructProfiling/20140224
    • rnastructure/5.5
    • root/5.26.00g
    • root/5.34.36
    • root/6.08.06
    • rosetta/3.4
    • rosetta/3.7
    • rrdtool/1.4.8
    • rro/8.0.1_r-3.1.2
    • ruby/1.9.3
    • ruby/2.1.5
    • ruby/2.5.1
    • sage/6.3-snappy-2.2
    • saguarogw/20140619
    • samtools/0.1.18(default)
    • samtools/0.1.19
    • samtools/1.0
    • sas/9.4(default)
    • SBMLToolbox/4.1.0
    • scala/2.10.0
    • scons/2.4.1
    • scotch/5.1.12
    • scotch/6.0.3
    • scythe/0.993
    • seal/0.3.2
    • seqpig/0.4
    • sharktools/0.1.5
    • shogun/2.0.0
    • shtools/2.8
    • sicer/1.1
    • sickle/20140729
    • Siemens/NX10.0
    • siesta/3.2-pl-4
    • siesta/3.2-pl-5
    • siesta/3.2-pl-5_orig
    • siesta/3.2-pl-5_rPulay
    • simulia/2017
    • slepc/3.5.3
    • smartgithg/4.0.2
    • smokeping/2.6.9
    • snappy/1.1.1
    • snappy/1.1.3
    • snphylo/20160204
    • snvbox/1.0.1
    • soap/2.21
    • SOAP/denovo/1.05(default)
    • SOAP/denovo2/r240
    • solar/7.6.4
    • spack/150826
    • spades/3.13.0
    • spades/3.5.0
    • spades/3.6.2
    • spark/1.5.0
    • spark/1.6.0
    • spark/2.1.0
    • sparsehash/2.0.2
    • spglib/1.9.4
    • spparks/26Feb16
    • staden/2.0.0b9
    • staden_io/1.12.5
    • STAR/2.5.3a
    • starccmplus/10.02.010
    • starccmplus/10.04.011-R8
    • starccmplus/10.04.11-R8
    • starccmplus/11.02.009
    • starccmplus/11.04.012
    • starccmplus/12.02.010
    • starccmplus/13.04.010-R8
    • starccmplus/9.02.007-R8
    • starccmplus/9.04.011-R8
    • suitesparse/4.1.0
    • suitesparse/4.4.4
    • sundials/2.5.0
    • sundials/2.6.2
    • sw4/1.1
    • swig/2.0.4
    • swig/3.0.5
    • synopsys/J-2014.12(default)
    • synopsys/O-2018.12
    • tbb/2.1.012
    • tbb/20180618
    • tbb/4.0
    • tbb/4.1
    • tcl/8.5.15
    • tcllib/1.15
    • tcoffee/8.93
    • tecplot360/2011R2
    • tecplot360/2013R1
    • tecplot360/2016R2
    • tempo2/1.9
    • tensorflow/0.12.0rc1
    • tensorflow/1.0.0
    • tensorflow/1.3.0
    • tensorflow/1.5.0-cuda8.0.44
    • tensorflow/1.5.0-cuda9.1(default)
    • titan/1.0.0
    • tklib/0.5
    • tmux/2.5(default)
    • tofet/2.083
    • tokyocabinet/1.4.48
    • tonto/3.2
    • tophat/1.4.1
    • tophat/2.0.12
    • tophat/2.0.3.1
    • tophat/2.0.8b
    • tophat/2.0.9
    • torch/1.0
    • torch/7
    • towhee/7.0.4/mpi
    • towhee/7.0.4/nompi
    • trf/4.07b
    • trilinos/11.0.3
    • trilinos/11.14.2
    • trilinos/11.6.1
    • trim_galore/0.3.7
    • trinityrnaseq/20131110
    • trinityrnaseq/20140717
    • trnascan-se/1.3.1
    • UCSC_Tools/20131204
    • udunits/2.1.24
    • udunits/2.2.24
    • UMFPACK/5.6.1
    • unison/2.40.102
    • use.own
    • usearch/8.0.1517
    • usearch/8.1.1861
    • valgrind/3.10.1
    • vasp/5.2.12
    • vasp/5.3.3(default)
    • vasp/5.3.5
    • vasp/5.4.4
    • vcftools/0.1.14.10
    • velvet/1.2.07(default)
    • velvet/1.2.09
    • velvet/1.2.10
    • vest/1.0.0
    • visit/2.5.0
    • visit/2.7.3
    • visit/2.9.0
    • vmd/1.9.1
    • vmd/1.9.2
    • VPython/6.05
    • vtk/5.10.1
    • vtk/5.8.0
    • vtk/6.0.0
    • vtk/6.1.0
    • vtk/7.1.1
    • vtk/8.1.0
    • vtstscripts/02072013
    • vtune/2013xe
    • vtune-amplifier/2016xe
    • wireshark/1.4.15
    • wireshark/1.6.12
    • wireshark/1.8.4
    • workflow-profiler/Jul14
    • wrf/3.3.1
    • wxPython/2.9.4.1
    • wxWidgets/2.8.12
    • xblas/1.0.248
    • xerces-c/3.1.1
    • xz/5.2.2
    • yasm/1.3.0
    • yt/2.4
    • yt/2.4dev
    • zeromq/4.0.3
    • zlib/1.2.8
    • zoem/11-166
RHEL7 Software
  • The following are available on nodes that run Red Hat Enterprise Linux 7 (RHEL7):
    • R/3.5.2
    • abaqus/2018
    • abinit/8.10.2
    • amber/18
    • amber-cuda90/16
    • anaconda2/2019.03
    • anaconda2/5.1.0
    • anaconda2/latest
    • anaconda3/2019.03
    • anaconda3/5.1.0
    • anaconda3/latest
    • ansys/19.1
    • argtable/3.0.3
    • ase/3.17.0
    • autoconf/2.69
    • bedtools2/2.27.1
    • blat/1.04.00
    • blender/2.79
    • boost/1.67.0
    • bowtie/1.2.2
    • bowtie2/2.3.4.1
    • bwa/0.7.17
    • bzip2/1.0.6
    • capnproto-c++/0.7.0
    • cdo/1.9.5
    • cfitsio/3.450
    • cgal/4.13
    • cln/1.3.4
    • clustal-omega/1.2.4
    • cmake/3.11.1
    • comsol/5.3a
    • cuda/10.0
    • cuda/9.0
    • cuda/9.2
    • cudnn/7.1
    • curl/7.61.1
    • curl/7.63.0
    • cutadapt/1.16
    • dakota/6.9.0
    • eigen/3.3.5
    • espresso/6.3
    • fastqc/0.11.7
    • fasttree/2.1.10
    • fastx_toolkit/0.0.13
    • fftw/3.3.8
    • fio/3.12
    • gams/25.1.3
    • gatk/4.1.1.0
    • gaussian/G16
    • gc/7.6.6
    • gc/7.6.8
    • gcc/4.8.5
    • gcc/4.8.5/gcc/9.1.0
    • gcc/7.3.0
    • gcc/8.2.0
    • gcc/9.1.0/autoconf/2.69
    • gcc/9.1.0/automake/1.16.1
    • gcc/9.1.0/bdw-gc/8.0.0
    • gcc/9.1.0/bison/3.0.5
    • gcc/9.1.0/boost/1.70.0
    • gcc/9.1.0/bzip2/1.0.6
    • gcc/9.1.0/cgal/4.13
    • gcc/9.1.0/cmake/3.14.4
    • gcc/9.1.0/diffutils/3.7
    • gcc/9.1.0/findutils/4.6.0
    • gcc/9.1.0/flex/2.6.4
    • gcc/9.1.0/gdbm/1.18.1
    • gcc/9.1.0/gettext/0.19.8.1
    • gcc/9.1.0/gmp/6.1.2
    • gcc/9.1.0/gnutls/3.6.8
    • gcc/9.1.0/guile/2.2.0
    • gcc/9.1.0/help2man/1.47.8
    • gcc/9.1.0/intel/19.0.3
    • gcc/9.1.0/libatomic-ops/7.6.6
    • gcc/9.1.0/libffi/3.2.1
    • gcc/9.1.0/libiconv/1.15
    • gcc/9.1.0/libnl/3.3.0
    • gcc/9.1.0/libpciaccess/0.13.5
    • gcc/9.1.0/libsigsegv/2.11
    • gcc/9.1.0/libtool/2.4.6
    • gcc/9.1.0/libunistring/0.9.10
    • gcc/9.1.0/libxml2/2.9.9
    • gcc/9.1.0/m4/1.4.18
    • gcc/9.1.0/mpfr/4.0.1
    • gcc/9.1.0/mvapich2/2.3.1
    • gcc/9.1.0/ncurses/6.1
    • gcc/9.1.0/nettle/3.4.1
    • gcc/9.1.0/openssl/1.0.2k-fips
    • gcc/9.1.0/perl/5.26.2
    • gcc/9.1.0/pkgconf/1.6.0
    • gcc/9.1.0/rdma-core/20
    • gcc/9.1.0/readline/7.0
    • gcc/9.1.0/tar/1.31
    • gcc/9.1.0/texinfo/6.5
    • gcc/9.1.0/util-macros/1.19.1
    • gcc/9.1.0/xz/5.2.4
    • gcc/9.1.0/zlib/1.2.11
    • gcc-compatibility/8.2.0
    • geant/4.10.04
    • gflags/2.2.1
    • ginac/1.7.4
    • git-lfs/2.7.1
    • glog/0.3.5
    • gmp/6.1.2
    • gnuparallel/20180922
    • gnuplot/5.2.4
    • gromacs/2018.4
    • gsl/2.4
    • guile/2.2.4
    • gurobi/8.1.0
    • harminv/1.4.1
    • hdf5/1.10.3
    • hdf5/1.8.20
    • hmmer/3.2.1
    • hwloc/1.11.9
    • idba/1.1.3
    • imagemagick/7.0.8
    • intel/17.0
    • intel/18.0
    • intel/19.0
    • intel/19.0.3/autoconf/2.69
    • intel/19.0.3/automake/1.16.1
    • intel/19.0.3/bison/3.0.5
    • intel/19.0.3/bzip2/1.0.6
    • intel/19.0.3/diffutils/3.7
    • intel/19.0.3/findutils/4.6.0
    • intel/19.0.3/gdbm/1.18.1
    • intel/19.0.3/gettext/0.19.8.1
    • intel/19.0.3/help2man/1.47.8
    • intel/19.0.3/libiconv/1.15
    • intel/19.0.3/libpciaccess/0.13.5
    • intel/19.0.3/libsigsegv/2.11
    • intel/19.0.3/libtool/2.4.6
    • intel/19.0.3/libxml2/2.9.9
    • intel/19.0.3/m4/1.4.18
    • intel/19.0.3/mvapich2/2.3.1
    • intel/19.0.3/ncurses/6.1
    • intel/19.0.3/perl/5.26.2
    • intel/19.0.3/pkgconf/1.6.0
    • intel/19.0.3/readline/7.0
    • intel/19.0.3/tar/1.31
    • intel/19.0.3/texinfo/6.5
    • intel/19.0.3/util-macros/1.19.1
    • intel/19.0.3/xz/5.2.4
    • intel/19.0.3/zlib/1.2.11
    • java/1.8.0_66
    • java/10.0.1
    • julia/1.0.0
    • keras/2.2.4
    • lammps/22Aug18
    • lapack/3.8.0
    • leslie-spec/21Feb19
    • leveldb/1.20.0
    • libatomic_ops/7.6.4
    • libctl/4.1.1
    • libevent/2.1.8
    • libgtextutils/0.7
    • libjpeg-turbo/2.0.0
    • libpng/1.6.35
    • libsodium/1.0.16
    • libtool/2.4.6
    • libunistring/0.9.10
    • libxc/4.2.3
    • libxsmm/1.9
    • lmdb/0.9.70
    • loader.tcl
    • mafft/7.402
    • maple/2018
    • mash/2.0
    • mathematica/11.2
    • matlab/r2018b
    • maven/3.5.4
    • mkl/2018u1
    • mkl/2019u1
    • mpc/1.0.3
    • mpfr/4.0.1
    • mprime/29.4
    • mummer/3.9.4
    • muscle/3.8.31
    • mvapich2/2.3
    • mvapich2/2.3.1-gkrwl3f/gcc/9.1.0/fftw/3.3.8-mva2
    • mvapich2/2.3.1-gkrwl3f/gcc/9.1.0/openfoam-com/1812-mva2
    • mvapich2/2.3.1-gkrwl3f/gcc/9.1.0/scotch/6.0.6-mva2
    • mvapich2/2.3.1-l6qkito/intel/19.0.3/osu-micro-benchmarks/5.5-mva2
    • nag/MARK_26
    • namd/2.12
    • namd/2.12-ibverbs
    • ncbi_blast/2.7.1
    • ncbi-blast/2.7.1
    • ncl/6.5.0
    • nco/4.6.3
    • nco/4.7.6
    • ncurses/6.1
    • netcdf/4.6.1
    • nodejs/10.7.0
    • nwchem/6.8.1
    • octave/4.4.1
    • openblas/0.2.20
    • openblas/0.3.5
    • openmpi/3.1.3
    • osu-micro-benchmarks/5.4.3
    • paraview/5.5.1
    • pcre/10.32
    • perl/5.26.2
    • perl/5.28.0
    • petsc/3.10.2
    • phonopy/2.0.0
    • picardtools/2.18.7
    • pnetcdf/1.10.0
    • povray/3.7.0.7
    • psi4/1.3
    • pytorch/0.5.0
    • qt/5.11.1
    • readline/6.3
    • README.txt
    • ruby/2.5.1
    • ruby/2.5.3
    • samtools/1.8
    • samtools/1.9
    • sbt/1.1.6
    • scala/2.12.6
    • scala/2.12.7
    • scons/3.0.4
    • scotch/6.0.5a
    • scythe/0.991
    • scythe/0.994_beta
    • snappy/1.1.7
    • spack/0.12.0
    • spark/2.4.0
    • spglib/1.10.3
    • spparks/18May17
    • starccmplus/13.04.010-R8
    • suitesparse/5.3.0
    • sundials/3.1.0
    • swig/3.0.12
    • sync_modules.sh
    • tbb/2018_U2
    • tecplot360/2018r1
    • tensorflow-gpu/1.8.0
    • tophat/2.1.1
    • torch/7
    • trim_galore/0.4.5
    • use.own
    • valgrind/3.13.0
    • vasp/5.4.4
    • vasp-gpu/5.4.4
    • vmd/1.9.4
    • vtk/8.1.1
    • xhpl/2.3
    • zeromq/4.2.3
    • zlib/1.2.11

Are there any software restrictions for the clusters?

  • Software must be compatible with the supported Operating System and properly licensed. HPC-relevant applications on OIT's Software Distribution website are readily available. All software on PACE-adminstered clusters must be installed and used in complicance with the Georgia Tech Cyber Security Policies.
  • Please contact pace-support@oit.gatech.edu if you have any questions regarding specific applications, software licensing, and/or testing.